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add drug dosages parsing, add postgres db

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ipu 2025-08-07 01:04:44 +03:00
parent c218e0bbf3
commit 4a59ba5f4a
15 changed files with 856 additions and 122 deletions
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147
alembic.ini Normal file
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# A generic, single database configuration.
[alembic]
# path to migration scripts.
# this is typically a path given in POSIX (e.g. forward slashes)
# format, relative to the token %(here)s which refers to the location of this
# ini file
script_location = %(here)s/alembic
# template used to generate migration file names; The default value is %%(rev)s_%%(slug)s
# Uncomment the line below if you want the files to be prepended with date and time
# see https://alembic.sqlalchemy.org/en/latest/tutorial.html#editing-the-ini-file
# for all available tokens
file_template = %%(year)d_%%(month).2d_%%(day).2d_%%(hour).2d%%(minute).2d-%%(rev)s_%%(slug)s
# sys.path path, will be prepended to sys.path if present.
# defaults to the current working directory. for multiple paths, the path separator
# is defined by "path_separator" below.
prepend_sys_path = .
# timezone to use when rendering the date within the migration file
# as well as the filename.
# If specified, requires the python>=3.9 or backports.zoneinfo library and tzdata library.
# Any required deps can installed by adding `alembic[tz]` to the pip requirements
# string value is passed to ZoneInfo()
# leave blank for localtime
# timezone =
# max length of characters to apply to the "slug" field
# truncate_slug_length = 40
# set to 'true' to run the environment during
# the 'revision' command, regardless of autogenerate
# revision_environment = false
# set to 'true' to allow .pyc and .pyo files without
# a source .py file to be detected as revisions in the
# versions/ directory
# sourceless = false
# version location specification; This defaults
# to <script_location>/versions. When using multiple version
# directories, initial revisions must be specified with --version-path.
# The path separator used here should be the separator specified by "path_separator"
# below.
# version_locations = %(here)s/bar:%(here)s/bat:%(here)s/alembic/versions
# path_separator; This indicates what character is used to split lists of file
# paths, including version_locations and prepend_sys_path within configparser
# files such as alembic.ini.
# The default rendered in new alembic.ini files is "os", which uses os.pathsep
# to provide os-dependent path splitting.
#
# Note that in order to support legacy alembic.ini files, this default does NOT
# take place if path_separator is not present in alembic.ini. If this
# option is omitted entirely, fallback logic is as follows:
#
# 1. Parsing of the version_locations option falls back to using the legacy
# "version_path_separator" key, which if absent then falls back to the legacy
# behavior of splitting on spaces and/or commas.
# 2. Parsing of the prepend_sys_path option falls back to the legacy
# behavior of splitting on spaces, commas, or colons.
#
# Valid values for path_separator are:
#
# path_separator = :
# path_separator = ;
# path_separator = space
# path_separator = newline
#
# Use os.pathsep. Default configuration used for new projects.
path_separator = os
# set to 'true' to search source files recursively
# in each "version_locations" directory
# new in Alembic version 1.10
# recursive_version_locations = false
# the output encoding used when revision files
# are written from script.py.mako
# output_encoding = utf-8
# database URL. This is consumed by the user-maintained env.py script only.
# other means of configuring database URLs may be customized within the env.py
# file.
# sqlalchemy.url = driver://user:pass@localhost/dbname
[post_write_hooks]
# post_write_hooks defines scripts or Python functions that are run
# on newly generated revision scripts. See the documentation for further
# detail and examples
# format using "black" - use the console_scripts runner, against the "black" entrypoint
# hooks = black
# black.type = console_scripts
# black.entrypoint = black
# black.options = -l 79 REVISION_SCRIPT_FILENAME
# lint with attempts to fix using "ruff" - use the module runner, against the "ruff" module
# hooks = ruff
# ruff.type = module
# ruff.module = ruff
# ruff.options = check --fix REVISION_SCRIPT_FILENAME
# Alternatively, use the exec runner to execute a binary found on your PATH
# hooks = ruff
# ruff.type = exec
# ruff.executable = ruff
# ruff.options = check --fix REVISION_SCRIPT_FILENAME
# Logging configuration. This is also consumed by the user-maintained
# env.py script only.
[loggers]
keys = root,sqlalchemy,alembic
[handlers]
keys = console
[formatters]
keys = generic
[logger_root]
level = WARNING
handlers = console
qualname =
[logger_sqlalchemy]
level = WARNING
handlers =
qualname = sqlalchemy.engine
[logger_alembic]
level = INFO
handlers =
qualname = alembic
[handler_console]
class = StreamHandler
args = (sys.stderr,)
level = NOTSET
formatter = generic
[formatter_generic]
format = %(levelname)-5.5s [%(name)s] %(message)s
datefmt = %H:%M:%S

1
alembic/README Normal file
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@ -0,0 +1 @@
Generic single-database configuration.

84
alembic/env.py Normal file
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@ -0,0 +1,84 @@
from logging.config import fileConfig
from sqlalchemy import engine_from_config
from sqlalchemy import pool
from alembic import context
from src import database as schema
# this is the Alembic Config object, which provides
# access to the values within the .ini file in use.
config = context.config
# Interpret the config file for Python logging.
# This line sets up loggers basically.
if config.config_file_name is not None:
fileConfig(config.config_file_name)
# add your model's MetaData object here
# for 'autogenerate' support
# from myapp import mymodel
# target_metadata = mymodel.Base.metadata
target_metadata = schema.Base.metadata
# other values from the config, defined by the needs of env.py,
# can be acquired:
# my_important_option = config.get_main_option("my_important_option")
# ... etc.
def run_migrations_offline() -> None:
"""Run migrations in 'offline' mode.
This configures the context with just a URL
and not an Engine, though an Engine is acceptable
here as well. By skipping the Engine creation
we don't even need a DBAPI to be available.
Calls to context.execute() here emit the given string to the
script output.
"""
from src.config import settings
url = settings.DATABASE_URL
context.configure(
url=url,
target_metadata=target_metadata,
literal_binds=True,
dialect_opts={"paramstyle": "named"},
render_as_batch=True,
)
with context.begin_transaction():
context.run_migrations()
def run_migrations_online() -> None:
"""Run migrations in 'online' mode.
In this scenario we need to create an Engine
and associate a connection with the context.
"""
from sqlalchemy import create_engine
from src.config import settings
url = settings.DATABASE_URL
connectable = create_engine(url)
with connectable.connect() as connection:
context.configure(
connection=connection,
target_metadata=target_metadata,
render_as_batch=True,
)
with context.begin_transaction():
context.run_migrations()
if context.is_offline_mode():
run_migrations_offline()
else:
run_migrations_online()

28
alembic/script.py.mako Normal file
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@ -0,0 +1,28 @@
"""${message}
Revision ID: ${up_revision}
Revises: ${down_revision | comma,n}
Create Date: ${create_date}
"""
from typing import Sequence, Union
from alembic import op
import sqlalchemy as sa
${imports if imports else ""}
# revision identifiers, used by Alembic.
revision: str = ${repr(up_revision)}
down_revision: Union[str, Sequence[str], None] = ${repr(down_revision)}
branch_labels: Union[str, Sequence[str], None] = ${repr(branch_labels)}
depends_on: Union[str, Sequence[str], None] = ${repr(depends_on)}
def upgrade() -> None:
"""Upgrade schema."""
${upgrades if upgrades else "pass"}
def downgrade() -> None:
"""Downgrade schema."""
${downgrades if downgrades else "pass"}

48
alembic/versions/2025_08_06_1933-c509dcf806d4_add_drug_table.py Normal file
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@ -0,0 +1,48 @@
"""add drug table
Revision ID: c509dcf806d4
Revises:
Create Date: 2025-08-06 19:33:52.814812
"""
from typing import Sequence, Union
from alembic import op
import sqlalchemy as sa
# revision identifiers, used by Alembic.
revision: str = 'c509dcf806d4'
down_revision: Union[str, Sequence[str], None] = None
branch_labels: Union[str, Sequence[str], None] = None
depends_on: Union[str, Sequence[str], None] = None
def upgrade() -> None:
"""Upgrade schema."""
# ### commands auto generated by Alembic - please adjust! ###
op.create_table('drugs',
sa.Column('id', sa.BigInteger(), nullable=False),
sa.Column('name', sa.String(), nullable=False),
sa.Column('dosage', sa.Float(), nullable=False),
sa.Column('dosage_unit', sa.String(), nullable=False),
sa.Column('unit_price', sa.Float(), nullable=False),
sa.Column('description', sa.Text(), nullable=True),
sa.PrimaryKeyConstraint('id')
)
with op.batch_alter_table('drugs', schema=None) as batch_op:
batch_op.create_index(batch_op.f('ix_drugs_id'), ['id'], unique=False)
batch_op.create_index(batch_op.f('ix_drugs_name'), ['name'], unique=False)
# ### end Alembic commands ###
def downgrade() -> None:
"""Downgrade schema."""
# ### commands auto generated by Alembic - please adjust! ###
with op.batch_alter_table('drugs', schema=None) as batch_op:
batch_op.drop_index(batch_op.f('ix_drugs_name'))
batch_op.drop_index(batch_op.f('ix_drugs_id'))
op.drop_table('drugs')
# ### end Alembic commands ###

31
compose.yaml
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@ -8,9 +8,15 @@ services:
- "${PUBLIC_API_PORT:-7311}:8000"
volumes:
- ./src:/app/src
- ./alembic/versions:/app/alembic/versions
depends_on:
- redis
- db
networks:
- ai-network
links:
- db
- redis
redis:
image: redis:7-alpine
@ -18,6 +24,29 @@ services:
- redis_data:/data
command: redis-server --appendonly yes
restart: unless-stopped
networks:
- ai-network
db:
image: postgres:17
env_file:
- .env
environment:
POSTGRES_USER: ${POSTGRES_USER}
POSTGRES_PASSWORD: ${POSTGRES_PASSWORD}
POSTGRES_DB: ${POSTGRES_DB}
ports:
- "${PUBLIC_POSTGRES_PORT:-5434}:5432"
volumes:
- postgres_data:/var/lib/postgresql/data
networks:
- ai-network
volumes:
redis_data:
postgres_data:
networks:
ai-network:
driver: bridge

8
pyproject.toml
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@ -14,6 +14,14 @@ dependencies = [
"lxml>=4.9.0",
"requests>=2.31.0",
"redis>=6.2.0",
"pip>=25.2",
"openpyxl>=3.1.5",
"pypdf2>=3.0.1",
"pdfplumber>=0.11.7",
"sqlalchemy[asyncio]>=2.0.42",
"asyncpg>=0.30.0",
"alembic>=1.16.4",
"psycopg2-binary>=2.9.10",
]
[project.optional-dependencies]

110
scripts/README.md
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@ -1,110 +0,0 @@
# Insurance Plan Processor Cron Setup
This directory contains scripts for running the insurance plan processor as a scheduled task.
## Files
- `run_insurance_processor.sh` - Main script to run the insurance plan processor from within the Docker container
## Setup Instructions
### 1. Test the Script
First, test that the script works correctly:
```bash
./scripts/run_insurance_processor.sh
```
### 2. Set up Cron Job
Add a cron job to run the script at your desired interval. For example, to run it daily at 2 AM:
```bash
# Open crontab for editing
crontab -e
# Add one of these lines depending on your needs:
# Run daily at 2 AM
0 2 * * * /path/to/lolly-ai/scripts/run_insurance_processor.sh
# Run every 6 hours
0 */6 * * * /path/to/lolly-ai/scripts/run_insurance_processor.sh
# Run every hour
0 * * * * /path/to/lolly-ai/scripts/run_insurance_processor.sh
# Run every 30 minutes
*/30 * * * * /path/to/lolly-ai/scripts/run_insurance_processor.sh
```
### 3. Verify Cron Job
Check that your cron job was added correctly:
```bash
crontab -l
```
### 4. Monitor Logs
The script creates logs in the `logs/` directory:
- `logs/insurance_processor.log` - General execution logs
- `logs/insurance_processor_error.log` - Error logs
Monitor these files to ensure the script is running correctly:
```bash
# View recent logs
tail -f logs/insurance_processor.log
# View error logs
tail -f logs/insurance_processor_error.log
```
## Prerequisites
- Docker Compose must be running with the `lolly-ai` service
- The `.env` file must be properly configured with API keys
- The script must have execute permissions (`chmod +x scripts/run_insurance_processor.sh`)
## Troubleshooting
### Common Issues
1. **Docker service not running**: The script checks if the Docker Compose service is running and will log an error if it's not.
2. **Permission denied**: Make sure the script is executable:
```bash
chmod +x scripts/run_insurance_processor.sh
```
3. **Path issues**: Make sure to use the full path to the script in your cron job.
4. **Environment variables**: The script uses the `.env` file from the project directory, so make sure it's properly configured.
### Debugging
To debug cron issues, you can temporarily run the script manually and check the logs:
```bash
# Run manually
./scripts/run_insurance_processor.sh
# Check logs
cat logs/insurance_processor.log
cat logs/insurance_processor_error.log
```
## Cron Schedule Examples
| Schedule | Description |
|----------|-------------|
| `0 2 * * *` | Daily at 2 AM |
| `0 */6 * * *` | Every 6 hours |
| `0 * * * *` | Every hour |
| `*/30 * * * *` | Every 30 minutes |
| `0 2 * * 1` | Every Monday at 2 AM |
| `0 2 1 * *` | First day of each month at 2 AM |

90
src/cache/drug_cache.py vendored Normal file
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@ -0,0 +1,90 @@
import json
import httpx
from pydantic import BaseModel
from src.database import Drug, Session
from src.drug_price_parser import DrugPriceParser, DrugPriceResponse
from src.config import settings
from src.services.session_service import session_service
class DrugFull(BaseModel):
name: str
dosage: float
dosage_unit: str
unit_price: float
description: str | None = None
async def convert_drug_result(drug: DrugPriceResponse) -> list[DrugFull]:
base_url = settings.TALESTORM_API_BASE_URL
api_key = settings.TALESTORM_API_KEY
client = httpx.AsyncClient(
base_url=base_url,
headers={"X-API-Key": api_key},
timeout=httpx.Timeout(60.0, connect=10.0) # 30s total timeout, 10s connect timeout
)
session_id = await session_service.create_session(agent_id=settings.TALESTORM_DRUG_AGENT_ID)
drug_json = drug.model_dump_json()
response = await client.post(
"/chat/",
json={"chat_session_id": session_id, "user_message": f"{drug_json}"},
)
response_json = response.json()['message']
response_dict = json.loads(response_json)
return [DrugFull.model_validate(r) for r in response_dict["result"]]
async def get_drug(drug_name: str) -> list[Drug]:
parser = DrugPriceParser()
result = parser.get_drug_prices(drug_name)
drugs = await convert_drug_result(result)
return drugs
async def store_drug(drugs: list[DrugFull]):
with Session() as session:
for drug in drugs:
session.add(Drug(
name=drug.name,
dosage=drug.dosage,
dosage_unit=drug.dosage_unit,
unit_price=drug.unit_price,
description=drug.description
))
session.commit()
async def fetch_drug_with_dosage(drug_name: str, dosage: float) -> DrugFull | None:
try:
with Session() as session:
drug = session.query(Drug).filter(Drug.name == drug_name, Drug.dosage == dosage).first()
if drug:
return DrugFull.model_validate(drug)
drug = session.query(Drug).filter(Drug.name == drug_name).first()
if drug:
return DrugFull.model_validate(drug)
except:
pass
drugs = await get_drug(drug_name)
print(f"Drug {drug_name} found {drugs}")
try:
await store_drug(drugs)
except Exception as e:
print(f"Error storing drug {drug_name}: {e}")
pass
drug = None
for c_drug in drugs:
if c_drug.dosage == dosage:
drug = c_drug
if drug:
return DrugFull.model_validate(drug)
raise Exception(f"Drug {drug_name} with dosage {dosage} not found")

13
src/config.py
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@ -14,13 +14,26 @@ class Settings(BaseSettings):
TALESTORM_AGENT_ID: str
TALESTORM_DTQ_AGENT_ID: str
TALESTORM_ESTIMATION_AGENT_ID: str
TALESTORM_DRUG_AGENT_ID: str
VIRGIL_API_BASE_URL: str
REDIS_HOST: str = "redis"
REDIS_PORT: int = 6379
REDIS_DB: int = 0
REDIS_CACHE_TTL: int = 3600 * 24
REDIS_CACHE_TTL_DRUGS: int = 3600 * 24 * 30
POSTGRES_USER: str
POSTGRES_PASSWORD: str
POSTGRES_DB: str
POSTGRES_HOST: str = "db"
POSTGRES_PORT: int = 5432
@property
def DATABASE_URL(self): # noqa
return f'postgresql://{self.POSTGRES_USER}:{self.POSTGRES_PASSWORD}@{self.POSTGRES_HOST}:{self.POSTGRES_PORT}/{self.POSTGRES_DB}'
# Global settings instance
settings = Settings(_env_file=env_path, _env_file_encoding='utf-8')

21
src/database.py Normal file
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@ -0,0 +1,21 @@
from sqlalchemy import BigInteger, Column, MetaData, String, Float, Text
from sqlalchemy.orm import DeclarativeBase
from sqlalchemy.orm import sessionmaker
from sqlalchemy import create_engine
from src.config import settings
class Base(DeclarativeBase):
metadata = MetaData()
class Drug(Base):
__tablename__ = "drugs"
id = Column(BigInteger, primary_key=True, index=True)
name = Column(String, nullable=False, index=True)
dosage = Column(Float, nullable=False)
dosage_unit = Column(String, nullable=False)
unit_price = Column(Float, nullable=False)
description = Column(Text, nullable=True)
engine = create_engine(settings.DATABASE_URL)
Session = sessionmaker(autocommit=False, autoflush=False, bind=engine)

9
src/drug_price_parser.py
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@ -87,13 +87,18 @@ class DrugPriceParser:
dosages_table = formulation.find_next('div')
dosage_elements = dosages_table.find_all('details')
for dosage in dosage_elements:
quantity_table = dosage.find('table')
quantity_row = quantity_table.find_all('td', {'class': 'ddc-text-right'})
price_per_unit = quantity_row[0].get_text()
price_per_unit = price_per_unit.split(" ")[0]
summary = dosage.find('summary')
spans = summary.find_all('span')
dosage_name = spans[0].find('b').get_text()
dosage_price = spans[1].find_next('b').get_text()
# dosage_price = spans[1].find_next('b').get_text()
dosages.append(Dosage(
name=dosage_name.rstrip(),
price=float(dosage_price.rstrip().replace('$', '').replace(',', ''))
price=float(price_per_unit.rstrip().replace('$', '').replace(',', ''))
))
formulations.append(Formulation(
name=formulation_name.rstrip(),

17
src/models.py
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@ -124,4 +124,19 @@ class HealthResponse(BaseModel):
status: str
service: str
version: str
dependencies: dict
dependencies: dict
class DrugCreate(BaseModel):
name: str = Field(..., description="Drug name")
dosage: float = Field(..., description="Dosage amount")
dosage_unit: str = Field(..., description="Dosage unit (e.g., mg, ml)")
unit_price: float = Field(..., description="Price per unit")
description: Optional[str] = Field(None, description="Drug description")
class DrugResponse(BaseModel):
id: int
name: str
dosage: float
dosage_unit: str
unit_price: float
description: Optional[str]

35
src/services/estimation_service_v2.py
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@ -1,8 +1,9 @@
from datetime import date
from enum import Enum
from typing import Optional
from src.cache.drug_cache import fetch_drug_with_dosage
from src.models import PHQ, Applicant, Plan, EstimationResponse, EstimationDetails, EstimationResult
from src.cache.redis_cache import fetch_conditions, fetch_drug, get_plan_by_id, search_drug
from src.cache.redis_cache import fetch_conditions, get_plan_by_id, search_drug
from src.config import settings
import httpx
@ -159,7 +160,7 @@ class EstimationService:
today = date.today()
return today.year - born.year - ((today.month, today.day) < (born.month, born.day))
def calculate_rx_spend(self, phq: PHQ, applicant_id: int) -> float:
async def calculate_rx_spend(self, phq: PHQ, applicant_id: int) -> float:
rx_spend = 0
for medication in phq.medications:
if medication.applicant != applicant_id:
@ -167,9 +168,29 @@ class EstimationService:
try:
drug_name = medication.name
drug_url = search_drug(drug_name)
drug_price = fetch_drug(drug_url)
rx_spend += drug_price.prices[0].dosages[0].price
except Exception:
drug_dosage = float(medication.dosage)
drug_price = await fetch_drug_with_dosage(drug_url, drug_dosage)
if medication.frequency in ["Once daily", "At bedtime"]:
month_times = 30
elif medication.frequency == "Twice daily":
month_times = 60
elif medication.frequency in ["Three times daily", "After meals", "Before meals"]:
month_times = 90
elif medication.frequency == "Four times daily":
month_times = 120
elif medication.frequency == "Weekly":
month_times = 4
elif medication.frequency == "Monthly":
month_times = 1
elif medication.frequency == "Every other day":
month_times = 15
else:
month_times = 1
rx_spend += drug_price.unit_price * month_times
except Exception as e:
raise e
pass
return rx_spend
@ -241,7 +262,7 @@ class EstimationService:
is_dtq = True
reason = "Declined due to high BMI of one or more applicants"
rx_spend_applicant = self.calculate_rx_spend(phq, applicant_id)
rx_spend_applicant = await self.calculate_rx_spend(phq, applicant_id)
rx_spend += rx_spend_applicant
applicant_new_tier = self.get_tier(plans[0].coverage, rx_spend_applicant)
@ -262,7 +283,7 @@ class EstimationService:
bmi=self.calculate_bmi(applicant.weight, applicant.heightFt, applicant.heightIn),
tier=applicant_tier.value,
rx_spend=rx_spend_applicant,
message=reason if reason else f"Tier {applicant_tier} assigned with Rx spend within allowed limits."
message=reason if reason else f"Tier {applicant_tier.value} assigned with Rx spend within allowed limits."
)
)

336
uv.lock generated
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@ -1,7 +1,21 @@
version = 1
revision = 2
revision = 3
requires-python = ">=3.13"
[[package]]
name = "alembic"
version = "1.16.4"
source = { registry = "https://pypi.org/simple" }
dependencies = [
{ name = "mako" },
{ name = "sqlalchemy" },
{ name = "typing-extensions" },
]
sdist = { url = "https://files.pythonhosted.org/packages/83/52/72e791b75c6b1efa803e491f7cbab78e963695e76d4ada05385252927e76/alembic-1.16.4.tar.gz", hash = "sha256:efab6ada0dd0fae2c92060800e0bf5c1dc26af15a10e02fb4babff164b4725e2", size = 1968161, upload-time = "2025-07-10T16:17:20.192Z" }
wheels = [
{ url = "https://files.pythonhosted.org/packages/c2/62/96b5217b742805236614f05904541000f55422a6060a90d7fd4ce26c172d/alembic-1.16.4-py3-none-any.whl", hash = "sha256:b05e51e8e82efc1abd14ba2af6392897e145930c3e0a2faf2b0da2f7f7fd660d", size = 247026, upload-time = "2025-07-10T16:17:21.845Z" },
]
[[package]]
name = "annotated-types"
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