add drug dosages parsing, add postgres db
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15 changed files with 856 additions and 122 deletions
1
alembic/README
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1
alembic/README
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Generic single-database configuration.
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84
alembic/env.py
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alembic/env.py
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from logging.config import fileConfig
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from sqlalchemy import engine_from_config
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from sqlalchemy import pool
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from alembic import context
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from src import database as schema
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# this is the Alembic Config object, which provides
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# access to the values within the .ini file in use.
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config = context.config
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# Interpret the config file for Python logging.
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# This line sets up loggers basically.
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if config.config_file_name is not None:
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fileConfig(config.config_file_name)
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# add your model's MetaData object here
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# for 'autogenerate' support
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# from myapp import mymodel
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# target_metadata = mymodel.Base.metadata
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target_metadata = schema.Base.metadata
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# other values from the config, defined by the needs of env.py,
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# can be acquired:
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# my_important_option = config.get_main_option("my_important_option")
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# ... etc.
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def run_migrations_offline() -> None:
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"""Run migrations in 'offline' mode.
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This configures the context with just a URL
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and not an Engine, though an Engine is acceptable
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here as well. By skipping the Engine creation
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we don't even need a DBAPI to be available.
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Calls to context.execute() here emit the given string to the
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script output.
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"""
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from src.config import settings
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url = settings.DATABASE_URL
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context.configure(
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url=url,
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target_metadata=target_metadata,
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literal_binds=True,
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dialect_opts={"paramstyle": "named"},
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render_as_batch=True,
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)
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with context.begin_transaction():
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context.run_migrations()
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def run_migrations_online() -> None:
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"""Run migrations in 'online' mode.
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In this scenario we need to create an Engine
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and associate a connection with the context.
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"""
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from sqlalchemy import create_engine
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from src.config import settings
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url = settings.DATABASE_URL
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connectable = create_engine(url)
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with connectable.connect() as connection:
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context.configure(
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connection=connection,
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target_metadata=target_metadata,
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render_as_batch=True,
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)
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with context.begin_transaction():
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context.run_migrations()
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if context.is_offline_mode():
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run_migrations_offline()
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else:
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run_migrations_online()
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28
alembic/script.py.mako
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alembic/script.py.mako
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"""${message}
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Revision ID: ${up_revision}
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Revises: ${down_revision | comma,n}
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Create Date: ${create_date}
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"""
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from typing import Sequence, Union
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from alembic import op
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import sqlalchemy as sa
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${imports if imports else ""}
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# revision identifiers, used by Alembic.
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revision: str = ${repr(up_revision)}
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down_revision: Union[str, Sequence[str], None] = ${repr(down_revision)}
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branch_labels: Union[str, Sequence[str], None] = ${repr(branch_labels)}
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depends_on: Union[str, Sequence[str], None] = ${repr(depends_on)}
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def upgrade() -> None:
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"""Upgrade schema."""
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${upgrades if upgrades else "pass"}
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def downgrade() -> None:
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"""Downgrade schema."""
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${downgrades if downgrades else "pass"}
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"""add drug table
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Revision ID: c509dcf806d4
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Revises:
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Create Date: 2025-08-06 19:33:52.814812
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"""
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from typing import Sequence, Union
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from alembic import op
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import sqlalchemy as sa
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# revision identifiers, used by Alembic.
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revision: str = 'c509dcf806d4'
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down_revision: Union[str, Sequence[str], None] = None
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branch_labels: Union[str, Sequence[str], None] = None
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depends_on: Union[str, Sequence[str], None] = None
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def upgrade() -> None:
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"""Upgrade schema."""
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# ### commands auto generated by Alembic - please adjust! ###
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op.create_table('drugs',
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sa.Column('id', sa.BigInteger(), nullable=False),
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sa.Column('name', sa.String(), nullable=False),
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sa.Column('dosage', sa.Float(), nullable=False),
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sa.Column('dosage_unit', sa.String(), nullable=False),
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sa.Column('unit_price', sa.Float(), nullable=False),
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sa.Column('description', sa.Text(), nullable=True),
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sa.PrimaryKeyConstraint('id')
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)
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with op.batch_alter_table('drugs', schema=None) as batch_op:
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batch_op.create_index(batch_op.f('ix_drugs_id'), ['id'], unique=False)
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batch_op.create_index(batch_op.f('ix_drugs_name'), ['name'], unique=False)
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# ### end Alembic commands ###
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def downgrade() -> None:
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"""Downgrade schema."""
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# ### commands auto generated by Alembic - please adjust! ###
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with op.batch_alter_table('drugs', schema=None) as batch_op:
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batch_op.drop_index(batch_op.f('ix_drugs_name'))
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batch_op.drop_index(batch_op.f('ix_drugs_id'))
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op.drop_table('drugs')
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# ### end Alembic commands ###
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